KREAP

Kinetic Re-Epithelialization Analysis Pipeline

Getting Started

Download the VM from here (OVA format) or here (VMDK format).
Set up Oracle VirtualBox (Help: Windows, Mac)

Import the KREAP VM

Follow the guide to import the KREAP VM into VirtualBox here.

Create a Plate zip and index

Learn more about the Plate zip and index file that are used as inputs for KREAP here.

Use Galaxy KREAP

Uploading file to Galaxy KREAP
Run KREAP Image Analysis
Run KREAP Data Modeling
Handling errors in the modeling result